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27 followers · 14 following
  • University of Wisconsin - Madison
  • Madison, WI, USA
  • LinkedIn in/patriciatran

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

Achievements

Achievement: Pull SharkAchievement: Arctic Code Vault Contributor

Organizations

@McMahonLab @AnantharamanLab @AquaticDataSciOpenSci

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Pinned

  1. UW-Madison-Bacteriology-Bioinformatics/chtc-containers UW-Madison-Bacteriology-Bioinformatics/chtc-containers Public

    CHTC-containers

  2. MAG_pipeline MAG_pipeline Public

    🐍 🧬 Turning my metagenomic MAG (metagenome-assembled genome) pipeline into a snakemake pipeline for increased reproducibility and scalability.

    Python 3

  3. LakeMendota-PairedOmics LakeMendota-PairedOmics Public

    R code used to clean, process, merge, and visualize data related to one of my thesis chapters.

    R 2

  4. LakeTanganyika LakeTanganyika Public

    Code to generate figures/analyses for the Lake Tanganyika project.

    R 2

  5. AnantharamanLab/METABOLIC AnantharamanLab/METABOLIC Public

    A scalable high-throughput metabolic and biogeochemical functional trait profiler

    Perl 170 42

  6. nf-core/mag nf-core/mag Public

    Assembly and binning of metagenomes

    Nextflow 199 103