Bioinformatician & Computational Pipeline Scientist
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University of Wisconsin - Madison
- Madison, WI, USA
- in/patriciatran
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UW-Madison-Bacteriology-Bioinformatics/chtc-containers
UW-Madison-Bacteriology-Bioinformatics/chtc-containers PublicCHTC-containers
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MAG_pipeline
MAG_pipeline Public🐍 🧬 Turning my metagenomic MAG (metagenome-assembled genome) pipeline into a snakemake pipeline for increased reproducibility and scalability.
Python 3
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LakeMendota-PairedOmics
LakeMendota-PairedOmics PublicR code used to clean, process, merge, and visualize data related to one of my thesis chapters.
R 2
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LakeTanganyika
LakeTanganyika PublicCode to generate figures/analyses for the Lake Tanganyika project.
R 2
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AnantharamanLab/METABOLIC
AnantharamanLab/METABOLIC PublicA scalable high-throughput metabolic and biogeochemical functional trait profiler
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