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run precommit hooks for formatting
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sbooeshaghi committed Apr 23, 2022
1 parent 91cb019 commit a6c8f2e
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Showing 7 changed files with 796 additions and 612 deletions.
4 changes: 2 additions & 2 deletions ffq/config.py
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GSE_SUMMARY_URL = 'https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=gds&id='
GSE_SUMMARY_TERMS = '&retmode=json'

# GEO entrez ftp links
# GEO entrez ftp links
FTP_GEO_URL = 'ftp.ncbi.nlm.nih.gov'
FTP_GEO_SAMPLE = '/geo/samples/'
FTP_GEO_SERIES = '/geo/series/'
FTP_GEO_SUPPL = '/suppl/'

# ENCODE REST API links
ENCODE_BIOSAMPLE_URL = 'https://www.encodeproject.org/biosamples/'
ENCODE_JSON = '/?format=json'
ENCODE_JSON = '/?format=json'
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