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    • Some simple code to test out decoupled Laplace approximation for evidence optimization
      MATLAB
      0000Updated Jul 14, 2024Jul 14, 2024
    • MATLAB
      MIT License
      1200Updated Jun 6, 2024Jun 6, 2024
    • VLR-STRF

      Public
      variational low rank estimation for spatiotemporal receptive fields
      MATLAB
      2200Updated May 22, 2023May 22, 2023
    • Cuda
      MIT License
      4610Updated Feb 8, 2023Feb 8, 2023
    • Gauss-Hermite Quadrature (for approximating integrals w.r.t. a Gaussian density)
      MATLAB
      MIT License
      0200Updated Feb 3, 2023Feb 3, 2023
    • Efficiently compute central and off-diagonal blocks of the inverse of a block-tridiagonal matrix
      MATLAB
      MIT License
      0000Updated Dec 25, 2022Dec 25, 2022
    • Maximum-evidence linear regression with ridge and graph Laplacian (smoothing) priors
      MATLAB
      MIT License
      1000Updated Nov 8, 2022Nov 8, 2022
    • MATLAB
      MIT License
      1500Updated Sep 19, 2022Sep 19, 2022
    • Jupyter Notebook
      114600Updated Sep 5, 2022Sep 5, 2022
    • Simple tutorial on Gaussian and Poisson GLMs for single and multi-neuron spike train data
      MATLAB
      MIT License
      369110Updated Jul 18, 2022Jul 18, 2022
    • Implementation of an input-output HMM with linear-Gaussian outputs
      MATLAB
      MIT License
      0000Updated May 23, 2022May 23, 2022
    • CBEM

      Public
      conductance-based encoding model
      MATLAB
      MIT License
      2300Updated May 23, 2022May 23, 2022
    • Datasets for "Mathematical Tools for Neuroscience" (NEU 314)
      MIT License
      0100Updated Nov 30, 2021Nov 30, 2021
    • Code for "High-contrast 'gaudy' images improve the training of deep neural network models of visual cortex" by Cowley and Pillow, NeurIPS 2020.
      Python
      1600Updated May 19, 2021May 19, 2021
    • makes raised cosine basis with log scaling of x axis
      MATLAB
      MIT License
      0100Updated Jan 22, 2021Jan 22, 2021
    • Datasets for NEU 560
      1000Updated Nov 13, 2020Nov 13, 2020
    • Extension of Psytrack to include learning
      Jupyter Notebook
      MIT License
      01000Updated Nov 8, 2020Nov 8, 2020
    • mTDRdemo

      Public
      Self-contained code to demonstrate how to use mTDR.
      MATLAB
      0400Updated Oct 8, 2020Oct 8, 2020
    • neuroGLM

      Public
      Fitting and analysis of trial-based neural spike responses with Generalized Linear Model (GLM).
      MATLAB
      MIT License
      386961Updated May 12, 2020May 12, 2020
    • Discrete entropy estimator using the Pitman-Yor mixture (PYM) prior
      MATLAB
      BSD 2-Clause "Simplified" License
      41810Updated Apr 5, 2020Apr 5, 2020
    • Implementation of Balanced Spiking Networks with Poisson Neurons, from Rullan & Pillow 2019.
      MATLAB
      3600Updated Mar 4, 2020Mar 4, 2020
    • fastASD

      Public
      Fast inference for high-D receptive fields using Automatic Smoothness Determination (ASD)
      MATLAB
      MIT License
      21000Updated Oct 27, 2019Oct 27, 2019
    • adaptive optimal training of animal behavior
      MATLAB
      MIT License
      1400Updated Sep 4, 2019Sep 4, 2019
    • Fitting and simulation of Poisson generalized linear model for single and multi-neuron spike trains (Pillow et al 2008).
      MATLAB
      MIT License
      263600Updated Jul 23, 2019Jul 23, 2019
    • For effective analysis and optimal experiment design for psychophysics experiments
      MATLAB
      MIT License
      0900Updated Dec 6, 2018Dec 6, 2018
    • Moment based estimator for subunit model described in Wu et.al, 2015
      MATLAB
      0000Updated Jul 17, 2018Jul 17, 2018
    • DRD

      Public
      DRD model described in Wu et.al, 2014
      MATLAB
      0100Updated Jul 13, 2018Jul 13, 2018
    • Linear-Nonlinear-Poisson (LNP) model fitting via Maximally-Informative-Dimensions (MID) / maximum likelihood
      MATLAB
      MIT License
      21900Updated Nov 26, 2017Nov 26, 2017
    • ratmapGPs

      Public
      GP regression for place field estimation
      MATLAB
      0000Updated Nov 4, 2017Nov 4, 2017
    • iSTAC

      Public
      information-theoretic Spike-Triggered Average and Covariance (iSTAC) estimator for receptive fields
      MATLAB
      MIT License
      1500Updated Sep 19, 2017Sep 19, 2017