Some useful scripts simplifying bureaucracy

graph mining on big data systems(course projcet of 15-799)

JBR Genome Browser

Bioinformatics library in Kotlin

Scientific literature explorer. Runs a Pubmed or Semantic Scholar search and allows user to explore high-level structure of result papers

SPAN Semi-supervised Peak Analyzer

📚 Freely available programming books

Automatic generation of reviews of scientific papers

Code and examples for "Learning on Knowledge Graph Dynamics Provides Early Warning of Impactful Research".

Virtual machines for iOS and macOS

macOS system monitor in your menu bar

Our re-implementation of SICER broad peak calling algorithm

Benchmarking ChIP-seq peak callers

BlueBERT, pre-trained on PubMed abstracts and clinical notes (MIMIC-III).

BioWordVec & BioSentVec: pre-trained embeddings for biomedical words and sentences

Implementation of the node2vec algorithm.

JSuffixArrays (Suffix Arrays in Java)

fCoSE: a fast Compound Spring Embedder

A Java API for high-throughput sequencing data (HTS) formats.

AvitoTech team playbook

Production code for PrePubMed

Bioinformatics institute Semester III project

Benchmarking computational single cell ATAC-seq methods

Machine learning lectures as a collection of ipynb workbooks

This is the development home of the workflow management system Snakemake. For general information, see

Repository for HSE course materials

With Holoviews, your data visualizes itself.

Bioinformatics institute Semester II project

IdeaVim – A Vim engine for JetBrains IDEs