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Issues: nf-core/tools

New functionality: nf-core config create
#2731 opened Feb 6, 2024 by jfy133
Open 1
[Project] Make nf-core create more customisable
#2340 opened Jun 27, 2023 by ewels
Open 3
[Project] Schema extensions
#2429 opened Sep 21, 2023 by ewels
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249 Open 783 Closed
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Issues list

Schema: Support multi-line text inputs schema
#3145 opened Aug 28, 2024 by ewels
1
Release PR (dev to master) does not fail with a pipeline still on dev version bug Something isn't working
#3144 opened Aug 28, 2024 by maxulysse
Pass a list of modules/subworkflows(files) to nf-core modules lint enhancement
#3140 opened Aug 26, 2024 by edmundmiller
Add a linting test for the metro map enhancement
#3135 opened Aug 23, 2024 by maxulysse
Remove try-catch blocks around institutional configs
#3132 opened Aug 21, 2024 by bentsherman
14
Move igenomes config into pipeline code
#3131 opened Aug 21, 2024 by bentsherman
2
Add -w, --fail-warned option to nf-core schema lint enhancement
#3123 opened Aug 16, 2024 by theJasonFan
Lint for test data paths and produce a warning/error if the config map is used? enhancement
#3114 opened Aug 13, 2024 by GallVp
@GallVp
MultiQC results not cacheable bug Something isn't working
#3110 opened Aug 12, 2024 by apeltzer
nf-core sync does not respect existing template config on dev branch
#3109 opened Aug 8, 2024 by awgymer
modules linting: Check that version.yml has version of all items in environment.yml linting modules Related to tools for working with DSL2 modules
#3107 opened Aug 8, 2024 by mashehu
Print test directory path in output from nf-core test enhancement
#3106 opened Aug 7, 2024 by erikrikarddaniel
Test pipelines with Singularity & Conda enhancement infrastructure pipeline-testing template nf-core pipeline/component template
#3098 opened Aug 5, 2024 by mirpedrol
Manual include or exclude specific files in template
#3088 opened Jul 30, 2024 by adamrtalbot
Move --migrate-pytest command to module test command group enhancement
#3082 opened Jul 29, 2024 by FriederikeHanssen
2
Fail to send the completion email bug Something isn't working
#3080 opened Jul 25, 2024 by HaidYi
Allow numbers in pipeline names enhancement
#3067 opened Jul 16, 2024 by adamrtalbot
3
Use resource limits instead of setting process directives in nf-test configuration enhancement
#3066 opened Jul 15, 2024 by adamrtalbot
Lint for pipeline nf-test contents enhancement
#3065 opened Jul 15, 2024 by adamrtalbot
Lint for tests/nextflow.config contents enhancement
#3064 opened Jul 15, 2024 by adamrtalbot
Lint contents of nf-test.config enhancement
#3063 opened Jul 15, 2024 by adamrtalbot
Lint unused import enhancement linting
#3057 opened Jul 11, 2024 by LouisLeNezet
modules test on a private modules server requires --git-remote bug Something isn't working
#3056 opened Jul 9, 2024 by SPPearce
linting for nf-test snapshot enhancement
#3049 opened Jul 4, 2024 by maxulysse
1
Subworkflow install failure still results in a 0 exit code bug Something isn't working
#3044 opened Jul 1, 2024 by jvfe
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