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Issues: nf-core/hic

Include pairtools protocol
#162 opened May 5, 2023 by nservant
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29 Open 66 Closed
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Issues list

Cannot edit config files
#209 opened Nov 1, 2024 by aperreault
bug with the bowtie2 2.5.2 bug Something isn't working
#208 opened Oct 22, 2024 by nservant
Reopening the split-fastq error bug Something isn't working
#198 opened Apr 30, 2024 by Krithika-Bhuvan
Improve multiQC report enhancement New feature or request
#190 opened Jan 26, 2024 by nservant
Add loop calling tools enhancement New feature or request
#189 opened Jan 26, 2024 by nservant
1
add calder2 module enhancement New feature or request
#188 opened Jan 26, 2024 by nservant version-2.2.0
sort extreme large pairs files
#176 opened Aug 3, 2023 by andyyhchen
Put FastQ File Splitting in a Dedicated Process enhancement New feature or request
#164 opened May 17, 2023 by ieres-amgen
8
Include pairtools protocol enhancement New feature or request
#162 opened May 5, 2023 by nservant
4 of 5 tasks
version-2.2.0
3
Change bwt2_index input to take input tar/tar.gz file rather than path base name enhancement New feature or request
#157 opened Apr 4, 2023 by IttaiEres
samplesheet check too stringent for header check bug Something isn't working
#152 opened Mar 7, 2023 by askol-lurie version-2.2.0
8
Chromap enhancement New feature or request
#134 opened Aug 14, 2022 by Johnsonzcode
update cooltools compartments enhancement New feature or request
#133 opened Jul 29, 2022 by nservant
1
bowtie2 indexes lost for genomes bigger than 4Gbp when --bwt2_index is not provided bug Something isn't working
#131 opened Jul 18, 2022 by oneillkza
1
singularity fails to pull the hic-1.3.0 container bug Something isn't working
#129 opened Jun 23, 2022 by Kevin-Brockers
3 of 4 tasks
Pipeline failure on second read during bowtie2_end_to_end bug Something isn't working
#128 opened Jun 17, 2022 by RenscoHogers
4 tasks done
Buffer underflow on -resume
#121 opened Mar 18, 2022 by syfobfx
perserve the qc pdf from hic pro enhancement New feature or request
#118 opened Feb 9, 2022 by yinshiyi
get_valid_interaction fails with exitcode 137 with --digestion arima bug Something isn't working
#113 opened Nov 10, 2021 by heuermh
4 tasks
6
conda environment error bug Something isn't working
#109 opened Sep 24, 2021 by erbon7
5
Input File Naming Convention bug Something isn't working
#92 opened Feb 24, 2021 by mxw010
1
design file enhancement New feature or request
#63 opened Jun 11, 2020 by nservant
reported bugs bug Something isn't working
#62 opened Jun 11, 2020 by nservant version-2.2.0
2
stepwise mode enhancement New feature or request
#56 opened May 19, 2020 by nservant
count vs distance decay curve enhancement New feature or request
#54 opened May 19, 2020 by nservant
1
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