Add RNA model

Merge branch 'bermuda' into 'master'

Clarify doc

See merge request algorithm/scrappie!185

Merge branch 'prerelease' into 'master'

Prerelease

See merge request algorithm/scrappie!182

* Changes to allow compilation on older platforms

Merge branch 'rrnrf' into 'master'

Recurrent Neural Network -- Random Fields

See merge request algorithm/scrappie!134

Initial support for squiggle-to-sequence prediction

*release-1.1.1*

  * Improved rgrgr models
  * Ability to write output to named file
  * Rename argument '--outformat' to '--format'

Merge branch 'localcall' into 'master'

Local (Smith-Waterman like) penalty around base calls

See merge request !115

Bump version and release notes