Update shell-sampling determination #241
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* Update reslicing to use new `mrgrid` command This also works with older `mrreslice` * Fix bad indent in tensorReorder() * Update documentation
* Add try/except loop to SNR plot * Fix eddy path when `--noqc` is parsef * Fix a bad indent * Update CHANGELOG
* Init tractography module with DSI Studio * Update main to use tractography modules * Update version and MANIFEST * Update docs
* Fix DTI protocol (#228) * Update reslicing to use new `mrgrid` command This also works with older `mrreslice` * Fix bad indent in tensorReorder() * Update documentation * Add bval scaling (#230) * Fix SNR plotting issues (#233) * Add try/except loop to SNR plot * Fix eddy path when `--noqc` is parsef * Fix a bad indent * Update CHANGELOG * Init tractography module (#234) * Init tractography module with DSI Studio * Update main to use tractography modules * Update version and MANIFEST * Update docs
* Add new functions to determine DWI shell sampling * Remove references to old functions * Change how shell sampling is determined * Update documentation
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This new method performs the proper checks required before labelling a DWI as fully-shelled. A DWI is half-shelled iff max B-value is less than 3000 AND the norm of the mean direction vector is more than 0.3.