cjBitSeq

Clusterwise Joint BitSeq for Differential Expression Analysis and transcript expression estimation

Installation:
- Run make inside this directory.
Detailed documentation:
- https://github.com/mqbssppe/cjBitSeq/wiki
cjBitSeq benchmarking experiments (drosophila and human annotations)
- https://github.com/ManchesterBioinference/cjBitSeq_benchmarking

Contact

For direct contact, please contact Panagiotis Papastamoulis (papastamoulis [at] aueb.gr)

Name		Name	Last commit message	Last commit date
Latest commit History 20 Commits
img		img
Makefile		Makefile
README.md		README.md
cjBitSeq		cjBitSeq
cjBitSeqWithinGene		cjBitSeqWithinGene
collapsed.cpp		collapsed.cpp
getClusters.R		getClusters.R
getClustersWithin.R		getClustersWithin.R
get_k_split.cpp		get_k_split.cpp
get_k_split.h		get_k_split.h
get_k_within.cpp		get_k_within.cpp
get_k_within.h		get_k_within.h
infiles.h		infiles.h
partitionParallelCut.R		partitionParallelCut.R
partitionParallelCutCOLLAPSED.R		partitionParallelCutCOLLAPSED.R
prepareAnnotationForcjBitSeq.R		prepareAnnotationForcjBitSeq.R
readProbWithinGene.R		readProbWithinGene.R
rjBitSeq		rjBitSeq
rjmcmcHOME.cpp		rjmcmcHOME.cpp
sparse.cpp		sparse.cpp
test-data.tar		test-data.tar
this.R		this.R
withinGeneCollapsed.cpp		withinGeneCollapsed.cpp
withinGeneCollapsedPrior2.cpp		withinGeneCollapsedPrior2.cpp