Repository for some archlinux tools I've written

Pipeline components for real-time phylodynamic analysis

submit jobs to slurm with quick-and-dirty python

Signal-level algorithms for MinION data

Sequence correction provided by ONT Research

Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly

Filtering and trimming of long read sequencing data

🔬 Assemble large genomes using short reads

Genome assembly evaluation tool

The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.

adapter trimmer for Oxford Nanopore reads

Ultrafast de novo assembly for long noisy reads (though having no consensus step)

TULIP - The Uncorrected Long read Itegration Pipeline

Tools (written in C using htslib) for manipulating next-generation sequencing data

a toolkit for working with Oxford nanopore data

A single molecule sequence assembler for genomes large and small.

GraphMap - A highly sensitive and accurate mapper for long, error-prone reads http://www.nature.com/ncomms/2016/160415/ncomms11307/full/ncomms11307.html Note: This was the original repository which…