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Perhaps these fields would be reported if the user specifies --qc ? |
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Sure, I can add that in. |
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Great! Thanks a lot! |
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It would be great to add the qc information: "pct_reads_mapped, num_reads_mapped, median_coverage
To the collate report and to the text reports for each sample. I believe they are currently only in the JSON files.
Also total_reads, pct_reads_unmapped, and num_reads_unmapped would be helpful metrics
Thanks for considering this!
Michael
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