Open-source usearch

Magical Rust patterns laid out and simplified

Tools for Multiple sequence alignment (MSA) fasta files.

reads counts/tpm calculation from aligned/sort sam

Tools for fasta/q manipulation

Store files and directory in an archive. Like tar, but faster and with direct random access.

An HTTP library for Rust

This is the Rust course used by the Android team at Google. It provides you the material to quickly teach Rust.

Dataframes powered by a multithreaded, vectorized query engine, written in Rust

Build smaller, faster, and more secure desktop and mobile applications with a web frontend.

diploid SNV caller for error-prone reads

an interactive web viewer for reference pangenome graphs

A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring

Optimal sequence-to-graph alignment with recombinations

A Rust wrapper around the Entrez API. Helps you access the Entrez API using idiomatic Rust. It also provides tools to parse the XML results from Entrez.

DeepSomatic is an analysis pipeline that uses a deep neural network to call somatic variants from tumor-normal and tumor-only sequencing data.

Common rust command-line macros and utilities, to write shell-script like tasks in a clean, natural and rusty way

《Hello 算法》：动画图解、一键运行的数据结构与算法教程。支持 Python, Java, C , C, C#, JS, Go, Swift, Rust, Ruby, Kotlin, TS, Dart 代码。简体版和繁体版同步更新，English version ongoing

Ampseer examines reads in fastq format and identifies which multiplex PCR primer set was used to generate the SARS-CoV-2 sequencing library they are read from. It is intended to differentiate betwe…

A comprehensive toolkit for mutational signature analysis

TCR and BCR assembly from RNA-seq data

Tools to work with GWAS-VCF summary statistics files

A Rust library and command line tool for working with genomic ranges and their data.

lightweight, standalone C inference engine for Google's Gemma models.

An extremely fast Python package and project manager, written in Rust.

Low level bindings and wrapper for slow5lib, an alternative for ONT Nanopore sequencing FAST5 output

Strain-level haplotyping for metagenomes with short or long-reads.

Bioinformatics I/O libraries in Rust

This library provides implementations of many algorithms and data structures that are useful for bioinformatics. All provided implementations are rigorously tested via continuous integration.

This repository contains a statistic library for the C programming language which prepare useful functions for dealing with average, standard deviation etc.