BWT construction and search

LexicMap: efficient sequence alignment against millions of prokaryotic genomes

Rust rewrite of SSHash

Read specialized NGS formats as data frames in R, Python, and more.

Command line tool for detecting life science data types.

Fulgor is a fast and space-efficient colored de Bruijn graph index.

Linear Programming for Rust, with a user-friendly API. This crate allows modeling LP problems, and lets you solve them with various solvers.

TeXpresso: live rendering and error reporting for LaTeX

A collection of minimizer-based sampling algorithms.

FMSI is an exact f-masked-superstrings-based index for membership queries and set operations on k-mer sets.

Implementation of a Backpack Quotient Filter

Brisk Reduced Index for Sequence of K-mers

🤖 Just a command runner

PTRHash minimal perfect hash function, based of PTHash

A Crash Course on Data Compression.

SuperSampler, an efficient scaled size sketching and sketch comparison tool

D2 is a modern diagram scripting language that turns text to diagrams.

A command-line benchmarking tool

An open access book on scientific visualization using python and matplotlib