AlphaFold 3 inference pipeline.

The first large protein language model trained follows structure instructions.

Making Protein Design accessible to all via Google Colab!

In silico directed evolution of peptide binders with AlphaFold

User friendly and accurate binder design pipeline

List of computational protein design research labs

Diffusion-based all-atom protein generative model.

Open source implementation of AlphaFold3

Repository for Show-o, One Single Transformer to Unify Multimodal Understanding and Generation.

Rank binders by structure modeling

Implementation for SE(3) diffusion model with application to protein backbone generation

Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)

Official repository for Target-Specific De Novo Peptide Binder Design with DiffPepBuilder

Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions

ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning

The LucaOne’s code, including model code and pre-training code.

Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch

Implementation of Alphafold 3 in Pytorch

To become an implementation of AlphaFold3 based on Uni-Fold.