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Commits on Aug 19, 2024

• version inc

  zachary-foster

  committed
  9873770
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• Merge branch 'main' of github.com:grunwaldlab/krisp

  zachary-foster

  committed
  44abfd4
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• fix bug caused by None in allele depth

  zachary-foster

  committed
  81f94be
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Commits on Mar 1, 2024

• Update README.md

  grunwald

  authored
  d95fca3
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Commits on Feb 15, 2024

• Update README.md

  grunwald

  authored
  daf7aef
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• Update README.md

  grunwald

  authored
  45adf0b
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Commits on Jan 17, 2024

• remove debug code

  zachary-foster

  committed
  d8477b6
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• remove debug code

  zachary-foster

  committed
  a4a99ca
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• version inc

  zachary-foster

  committed
  00dbae1
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• typo fix

  zachary-foster

  committed
  82c16c0
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• version inc

  zachary-foster

  committed
  b320281
  More actions

• Merge branch 'main' of github.com:grunwaldlab/krisp

  zachary-foster

  committed
  106ae1c
  More actions

• add colorama to dependencies

  zachary-foster

  committed
  90510d3
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Commits on Nov 20, 2023

• Update README.md

  grunwald

  authored
  338f158
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Commits on Nov 16, 2023

• Update README.md

  grunwald

  authored
  7f32884
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Commits on Nov 14, 2023

• version 0.1.1 upload

  zachary-foster

  committed
  ef184f9
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• trying to fix issues when uploading to PyPi

  zachary-foster

  committed
  ac80941
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• reformat package to standard src layout

  zachary-foster

  committed
  e2fb389
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Commits on Oct 30, 2023

• change warning message when alignments cannot be printed

  zachary-foster

  committed
  c85c456
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Commits on Oct 26, 2023

• fix bug with column name check

  zachary-foster

  committed
  afe7ee2
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Commits on Oct 25, 2023

• added --force option

  zachary-foster

  committed
  0f7b257
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Commits on Oct 19, 2023

• added error when samples specified in the metadata are not present in the VCF

  zachary-foster

  committed
  7e689d5
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• added region_id column that makes it easier to find alignments that go with a CSV output

  zachary-foster

  committed
  26dea23
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• added columns in CSV output for number of samples missing data and their IDs

  zachary-foster

  committed
  e1f7ea3
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Commits on Oct 18, 2023

• Added --var_location and --crrna_len options to control positioning and size of the crRNA

  zachary-foster

  committed
  43194fe
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• added total group counts to alignment output

  zachary-foster

  committed
  ebfda31
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• replace code to avoid overlapping variants with handling alignment rendering errors

  zachary-foster

  committed
  4ffbcc4
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• added --min_samp_prop to filter by proprotion of samples in each groups as well as counts

  zachary-foster

  committed
  eb13b3e
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• added --min_var_qual and --min_map_qual filters/options

  zachary-foster

  committed
  ff7fdd7
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Commits on Oct 17, 2023

• added min_freq option to filter out low-abundance alleles

  zachary-foster

  committed
  6d7219b
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Commits on Oct 13, 2023

• Warn if fewer samples than the minimum numbers specified by --min_samples; resolves #19

  zachary-foster

  committed
  c5dc1a8
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Commits on Oct 12, 2023

• resolves #21

  zachary-foster

  committed
  a313c11
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• Make stat counters update when no diagnostic sites are found; resolves #8

  zachary-foster

  committed
  7b57163
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• added error when one or more user-defined groups are not present in the metadata file

  zachary-foster

  committed
  e1400d3
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• Merge branch 'main' of github.com:grunwaldlab/krisp

  zachary-foster

  committed
  01cc2b8
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