A simple command line tool to wrap blender 2.8 as a jupyter kernel.

This repository hosts a minimal version of a Python API for BPNet.

Processing and plotting tools for genomics data

a minimal, scriptable genome browser for python

Python implementation of Chatterjee's Rank Correlation, its modifications, and other offshoots

The detection of peaks and valleys in a 1d-vector or 2d-array (image)

Code at the speed of thought – Zed is a high-performance, multiplayer code editor from the creators of Atom and Tree-sitter.

A cool place to store your Hi-C

Unix commands for Jupyter notebooks.

A natural language interface for computers

⚡ A Fast, Extensible Progress Bar for Python and CLI

n³ The unorthodox terminal file manager

Genomic interval operations on Pandas DataFrames

pyranges/bioframe for polars

Read specialized NGS formats as data frames in R, Python, and more.

Read bigwig into pyranges or dataframe

A new markup-based typesetting system that is powerful and easy to learn.

Compile type annotated Python to fast C extensions

Slurm TUI

A high-performance, zero-overhead, extensible Python compiler using LLVM

A simple, fast and user-friendly alternative to 'find'

A cat(1) clone with wings.

Exploring the Cooler format to store whole-genome datasets arranged into a Hilbert curve

Scalable genetics toolkit

Color palette package in R inspired by works at the Metropolitan Museum of Art in New York