-
simlef.pyx - simulate loop extrusion in 1d with simulate()
-
looptools.py - analyse the structure of extruded loops:
- build trees of nested loops with get_parent_loops()
- find root loops with get_roots()
- identify the positions between the root loops with get_backbone()
- identify stacked LEFs with stack_lefs()
-
loopviz.py - visualize loops with plot_lefs()
-
simlef_twosided.pyx - simulate loops extrusion with synchronized extrusion blocking
forked from open2c/looplib
-
Notifications
You must be signed in to change notification settings - Fork 0
gfudenberg/looplib
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
Folders and files
Name | Name | Last commit message | Last commit date | |
---|---|---|---|---|
Repository files navigation
About
A library to analyse the structure of 1d loops and simulate loop extrusion by loop extruding factors.
Resources
Stars
Watchers
Forks
Releases
No releases published
Packages 0
No packages published
Languages
- Jupyter Notebook 77.7%
- Python 22.3%