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getzlab

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  1. rnaseqc rnaseqc Public

    Fast, efficient RNA-Seq metrics for quality control and process optimization

    C 146 19

  2. SignatureAnalyzer SignatureAnalyzer Public

    Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.

    Python 71 21

  3. deTiN deTiN Public

    DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated matched control.

    Jupyter Notebook 49 21

  4. MutSig2CV MutSig2CV Public

    MutSig2CV from Lawrence et al. 2014

    MATLAB 30 8

  5. dalmatian dalmatian Public

    dalmatian is a collection of high-level companion functions for Firecloud and FISS.

    Python 18 13

  6. CPTAC_PanCan_PTM_2023 CPTAC_PanCan_PTM_2023 Public

    Jupyter Notebook 14 1

Repositories

Showing 10 of 74 repositories
  • slurm_gcp_docker Public

    Spin up autoscaling Dockerized Slurm clusters on GCP

    getzlab/slurm_gcp_docker’s past year of commit activity
    Python 0 2 2 3 Updated Oct 7, 2024
  • cnv_suite Public Forked from ConorMesser/cnv_suite

    Compare, Visualize, and Simulate Copy Number Profiles

    getzlab/cnv_suite’s past year of commit activity
    Jupyter Notebook 2 BSD-3-Clause 4 0 2 Updated Oct 4, 2024
  • getzlab.github.io Public Forked from drummondlab/drummondlab.github.io

    Getz Lab site

    getzlab/getzlab.github.io’s past year of commit activity
    HTML 4 55 0 0 Updated Oct 4, 2024
  • PhylogicNDT Public Forked from broadinstitute/PhylogicNDT

    Fork for adding Python 3/hg38 support to PhylogicNDT

    getzlab/PhylogicNDT’s past year of commit activity
    HTML 0 39 0 1 Updated Sep 30, 2024
  • DLBclass-tool Public
    getzlab/DLBclass-tool’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Sep 30, 2024
  • dig_test_mutation_burden Public

    This repo contains scripts that, given a mutation map, test coding and non-coding regions for positive selection and generate html reports.

    getzlab/dig_test_mutation_burden’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 27, 2024
  • canine Public

    A modular, high-performance computing solution to run jobs using SLURM

    getzlab/canine’s past year of commit activity
    Python 6 BSD-3-Clause 6 14 3 Updated Sep 27, 2024
  • van_allen_comut Public Forked from vanallenlab/comut

    Van Allen CoMut package

    getzlab/van_allen_comut’s past year of commit activity
    Python 0 MIT 26 0 0 Updated Aug 29, 2024
  • PurityReviewer Public

    Suite of purity reviewers and review components

    getzlab/PurityReviewer’s past year of commit activity
    Jupyter Notebook 2 0 0 0 Updated Aug 29, 2024
  • SignatureAnalyzer Public

    Updated SignatureAnalyzer-GPU with mutational spectra & RNA expression compatibility.

    getzlab/SignatureAnalyzer’s past year of commit activity
    Python 71 MIT 21 3 0 Updated Aug 27, 2024
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