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Genomic Mechanisms of Ontogenesis

Sector of Genomic Mechanisms of Ontogenesis, Institute of Cytology and Genetics, SB RAS
README.md

This is github page for the genomic mechanisms of development group, ICG SB RAS. We publish software and scripts related to Hi-C data analysis, epigenetics, genomics and etc. Welcome!

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  1. Charm Charm Public

    Forked from NuriddinovMA/Charm

    Charm is a flexible pipeline to simulate chromosomal rearrangements on Hi-C-like data

    Python 7

  2. 3DGenBench 3DGenBench Public

    Web service for 3D chromatin structure predictive models comparison

    PHP 2 1

  3. FastContext FastContext Public

    FastQ Nucleotide Context Statistics Calculation

    HTML 2

  4. ExoC ExoC Public

    1

  5. labjournal labjournal Public

    Laboratory journal of Emil

    HTML 2

  6. Web_3DPredictor Web_3DPredictor Public

    Forked from polyaB/Web_3DPredictor

    Python

Repositories

Showing 10 of 21 repositories
  • Charm Public Forked from NuriddinovMA/Charm

    Charm is a flexible pipeline to simulate chromosomal rearrangements on Hi-C-like data

    genomech/Charm’s past year of commit activity
    Python 7 1 0 0 Updated Jul 23, 2024
  • juicer1.6_compact Public Forked from aidenlab/juicer

    A One-Click System for Analyzing Loop-Resolution Hi-C Experiments

    genomech/juicer1.6_compact’s past year of commit activity
    Shell 0 MIT 182 0 0 Updated Apr 30, 2024
  • ExoC Public
    genomech/ExoC’s past year of commit activity
    1 MIT 0 0 0 Updated Apr 2, 2024
  • PlotBigwigOnBed Public Forked from Asirix1/PlotBigwigOnBed

    Aggregate bigWig signal across specific genomic locations

    genomech/PlotBigwigOnBed’s past year of commit activity
    Python 0 2 0 0 Updated Jun 9, 2023
  • .github Public
    genomech/.github’s past year of commit activity
    0 0 0 0 Updated May 29, 2023
  • exoclasma-note Public

    Annotation of genomic variants

    genomech/exoclasma-note’s past year of commit activity
    Python 0 GPL-3.0 1 0 0 Updated May 4, 2023
  • 3DGenBench Public

    Web service for 3D chromatin structure predictive models comparison

    genomech/3DGenBench’s past year of commit activity
    PHP 2 GPL-3.0 1 0 0 Updated Jan 12, 2023
  • exoclasma-pipe Public

    Align & Stats Tool for ExoClasma Suite

    genomech/exoclasma-pipe’s past year of commit activity
    Python 0 GPL-3.0 0 7 0 Updated Dec 29, 2022
  • exoclasma-jooser Public

    aidenlab/juicer Python implementation, part of ExoClasma Suite

    genomech/exoclasma-jooser’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Dec 29, 2022
  • Scissors Public

    Scissors: SNP Discovery in Exo-C Data

    genomech/Scissors’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 8, 2022
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