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flaskapigenome Public
a flask based api development for genomescale application.
Python MIT License UpdatedJul 12, 2024 -
pacbiohifi-analyzer Public
a pacbiohifi analyzer for pacbiohifi reads from sequence analysis to the graph alignments.
JavaScript MIT License UpdatedJul 11, 2024 -
candida literature bert machine learning. works on any literature term from pubmed.
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ontologyanalyzer Public
ontologyanalyzer implementing semantic web and graph ontologies for analyzing biological terms.
Python MIT License UpdatedJul 11, 2024 -
pbs-configure-R Public
R code for the PBS users for generating and working on the PBS clusters
r high-performance computational-biology high-performance-computing rprogramming rproject rprofile-managementR MIT License UpdatedJul 11, 2024 -
tairaccession Public
tairaccession python package for interaction with tair and analyzing arabidopsis genome.
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conda-slint-UI Public
a slint UI for the anaconda package interactions.
Slint MIT License UpdatedJul 11, 2024 -
BIGG-slint-interface Public
a slint interface to the BIGG modeler database establishing all the links to the metanextx
Slint MIT License UpdatedJul 11, 2024 -
resistance-gene-localizer Public
motif locator for plant resistance genes.
Python MIT License UpdatedJul 11, 2024 -
mongodb-genome Public
python class to prepare the genome files for the mongodb atlas
Python MIT License UpdatedJul 11, 2024 -
sqlite3-genome Public
a sql python class to prepare the genome files for the sqlite3
Python MIT License UpdatedJul 11, 2024 -
arabidopsis-tair-application Public
arabidopsis TAIR desktop application
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julia-pacbiohifi-mvc-app Public
julia web mvc implementation for the pacbiohifi. faster I/O as they runs through the sequencing.
JavaScript MIT License UpdatedJul 11, 2024 -
pacbiohifi-seq-app Public
a single page shiny express pacbiohifi-seq-app for sequencing facility or startups
startups shinydashboard sequencing-data pacbio-sequencing pacbiohifi sequencing-data-analysis shinyexpressPython MIT License UpdatedJul 11, 2024 -
genomeassembly-benchmarks Public
PacbioHifi and HiC haploytypes benchmark from assembly to annotation.
bioinformatics genome-assembly pacbioreadsconnection protoype pacbio-sequencing pacbio-hifi-sequencing-readsHTML MIT License UpdatedJul 11, 2024 -
julia-poweranges.jl Public
julia implementation of the recursive hash split.
Julia MIT License UpdatedJul 11, 2024 -
julia-readvariantannot.jl Public
implementing mutable structs and multiple dispatch over the junction annotations.
Julia MIT License UpdatedJul 11, 2024 -
julia-BIGG-matlabanalyzer.jl Public
julia matlabanalyzer to analyze the BIGG metabolic matrix
Julia MIT License UpdatedJul 11, 2024 -
julia-pangenes.jl Public
julia metaproamming to visualize the pangenes
Julia MIT License UpdatedJul 11, 2024 -
julia implementation of the kmer profiles and genomescope
Julia MIT License UpdatedJul 11, 2024 -
julia-pangenealign.jl Public
profiling variants for the pangenes alignments
Julia MIT License UpdatedJul 11, 2024 -
julia-BIGG-metabolicmaps.jl Public
using julia and vector graphics to make escher metabolic maps.
Julia MIT License UpdatedJul 11, 2024 -
julia-genomic-interval Public
a genomic interval search applied for faster search of the annotation
Julia MIT License UpdatedJul 11, 2024 -
streamlit-genomeannotate Public
streamlit multipage genome analyzer
Python MIT License UpdatedJul 11, 2024 -
streamlit application to analyze the BIGG Metabolic models.
Python MIT License UpdatedJul 11, 2024 -
a streamlit application to interact with arabidopsis plant obo for graphviz and other functions
javascript graphviz bioinfomatics arabidopsis arabidopsis-thaliana streamlit-webapp streamlit-applicationPython MIT License UpdatedJul 11, 2024 -
streamlit application for metabolic json from BIGG modelling database.
Python MIT License UpdatedJul 11, 2024 -
streamlit-pacbiohifi Public
a streamlit component for reading and plotting the PacBioHiFi sequencing reads.
Python MIT License UpdatedJul 11, 2024 -
grommet Public
Forked from grommet/grommeta react-based framework that provides accessibility, modularity, responsiveness, and theming in a tidy package
JavaScript Apache License 2.0 UpdatedJul 10, 2024