a graphanalyzer package that uses the information from the paf and the gfa files for the graph alignment and uses the concurrency to process the alignments and other variables and uses a dataframe approach. You can find the code in the src/graphanalyzer.py and you can use those as import in your script untill the complete package is available from pip. a heuristic binary search implementation of the node in the graph clustering. It follows the stack implementation so that that the weight to the next node can be assigned on the search pattern. Written in a combination of C and python. Added the support for the visualization of graphics.

Update: 2024-3-1: Adding the support for the deadlock programming to enable the multi threads.

Gaurav Sablok
Academic Staff Member
Bioinformatics
Institute for Biochemistry and Biology
University of Potsdam
Potsdam,Germany

$ pip install graphanalyzer

• TODO

Interested in contributing? Check out the contributing guidelines. Please note that this project is released with a Code of Conduct. By contributing to this project, you agree to abide by its terms.

graphanalyzer was created by Gaurav Sablok. It is licensed under the terms of the MIT license.

graphanalyzer was created with cookiecutter and the py-pkgs-cookiecutter template.