* Add "Aim-spaCy" to spaCy Universe (#10943)

* Add Aim-spaCy to spaCy universe

* Update Aim thumbnail

* Fix author links

Co-authored-by: Paul O'Leary McCann <[email protected]>

* Auto-format code with black (#10945)

Co-authored-by: explosion-bot <[email protected]>

* precomputable_biaffine: avoid concatenation (#10911)

The `forward` of `precomputable_biaffine` performs matrix multiplication
and then `vstack`s the result with padding. This creates a temporary
array used for the output of matrix concatenation.

This change avoids the temporary by pre-allocating an array that is
large enough for the output of matrix multiplication plus padding and
fills the array in-place.

This gave me a small speedup (a bit over 100 WPS) on de_core_news_lg on
M1 Max (after changing thinc-apple-ops to support in-place gemm as BLIS
does).

* Add failing test: `test_matcher_extension_in_set_predicate` (#10948)

* vectors: remove use of float as row number (#10955)

The float -1 was returned rather than the integer -1 as the row for
unknown keys. This doesn't introduce a realy bug, since such floats
cast (without issues) to int in the conversion to NumPy arrays. Still,
it's nice to to do the correct thing :).

* Update for CBlas changes in Thinc 8.1.0.dev2 (#10970)

* Workaround for Typer optional default values with Python calls (#10788)

* Workaround for Typer optional default values with Python calls: added test and workaround.

* @rmitsch Workaround for Typer optional default values with Python calls: reverting some black formatting changes.

Co-authored-by: Sofie Van Landeghem <[email protected]>

* @rmitsch Workaround for Typer optional default values with Python calls: removing return type hint.

Co-authored-by: Sofie Van Landeghem <[email protected]>

* Workaround for Typer optional default values with Python calls: fixed imports, added GitHub issue marker.

* Workaround for Typer optional default values with Python calls: removed forcing of default values for optional arguments in init_config_cli(). Added default values for init_config(). Synchronized default values for init_config_cli() and init_config().

* Workaround for Typer optional default values with Python calls: removed unused import.

* Workaround for Typer optional default values with Python calls: fixed usage of optimize in init_config_cli().

* Workaround for Typer optional default values with Pythhon calls: remove output_file from InitDefaultValues.

* Workaround for Typer optional default values with Python calls: rename class for default init values.

* Workaround for Typer optional default values with Python calls: remove newline.

* remove introduced newlines

* Remove test_init_config_from_python_without_optional_args().

* remove leftover import

* reformat import

* remove duplicate

Co-authored-by: Sofie Van Landeghem <[email protected]>

* Made _initialize_X() methods private. (#10978)

* Auto-format code with black (#10977)

Co-authored-by: explosion-bot <[email protected]>

* account for NER labels with a hyphen in the name (#10960)

* account for NER labels with a hyphen in the name

* cleanup

* fix docstring

* add return type to helper method

* shorter method and few more occurrences

* user helper method across repo

* fix circular import

* partial revert to avoid circular import

* `enable` argument for spacy.load() (#10784)

* Enable flag on spacy.load: foundation for include, enable arguments.

* Enable flag on spacy.load: fixed tests.

* Enable flag on spacy.load: switched from pretrained model to empty model with added pipes for tests.

* Enable flag on spacy.load: switched to more consistent error on misspecification of component activity. Test refactoring. Added  to default config.

* Enable flag on spacy.load: added support for fields not in pipeline.

* Enable flag on spacy.load: removed serialization fields from supported fields.

* Enable flag on spacy.load: removed 'enable' from config again.

* Enable flag on spacy.load: relaxed checks in _resolve_component_activation_status() to allow non-standard pipes.

* Enable flag on spacy.load: fixed relaxed checks for _resolve_component_activation_status() to allow non-standard pipes. Extended tests.

* Enable flag on spacy.load: comments w.r.t. resolution workarounds.

* Enable flag on spacy.load: remove include fields. Update website docs.

* Enable flag on spacy.load: updates w.r.t. changes in master.

* Implement Doc.from_json(): update docstrings.

Co-authored-by: Adriane Boyd <[email protected]>

* Implement Doc.from_json(): remove newline.

Co-authored-by: Adriane Boyd <[email protected]>

* Implement Doc.from_json(): change error message for E1038.

Co-authored-by: Adriane Boyd <[email protected]>

* Enable flag on spacy.load: wrapped docstring for _resolve_component_status() at 80 chars.

* Enable flag on spacy.load: changed exmples for enable flag.

* Remove newline.

Co-authored-by: Sofie Van Landeghem <[email protected]>

* Fix docstring for Language._resolve_component_status().

* Rename E1038 to E1042.

Co-authored-by: Adriane Boyd <[email protected]>
Co-authored-by: Sofie Van Landeghem <[email protected]>

* add counts to verbose list of NER labels (#10957)

* Update linguistic-features.md (#10993)

Change link for downloading fasttext word vectors

* Use thinc-apple-ops>=0.1.0.dev0 with `apple` extras (#10904)

* Use thinc-apple-ops>=0.1.0.dev0 with `apple` extras

Also test with thinc-apple-ops that is at least 0.1.0.dev0.

* Check thinc-apple-ops on macOS with Python 3.10

Co-authored-by: Adriane Boyd <[email protected]>

* Use `pip install --pre` for installing thinc-apple-ops in CI

Co-authored-by: Adriane Boyd <[email protected]>

Co-authored-by: Gor Arakelyan <[email protected]>
Co-authored-by: Paul O'Leary McCann <[email protected]>
Co-authored-by: github-actions[bot] <41898282 github-actions[bot]@users.noreply.github.com>
Co-authored-by: explosion-bot <[email protected]>
Co-authored-by: Madeesh Kannan <[email protected]>
Co-authored-by: Raphael Mitsch <[email protected]>
Co-authored-by: Sofie Van Landeghem <[email protected]>
Co-authored-by: Adriane Boyd <[email protected]>
Co-authored-by: Victoria <80417010 [email protected]>