Welcome to the BigTrace wiki!

This is a FIJI plugin for tracing and analysis of curvilinear structures in volumetric microscopy datasets
(using BigVolumeViewer for visualization).

BigTrace provides an interface of 3D ROIs (points, straight/curved lines, planes)
for semi-manual/semi-automatic segmentation of lines, curves, and spotty objects.

The plugin is scriptable using ImageJ macros.

Main pages of Wiki to start with:

• How to install plugin
• How to use plugin
• How to cite plugin?

Content:

• Display and navigation
• Creating ROIs
• Panels:
  • View/Clip
  • Tracing
  • Measure
  • Tracking
  • Animation
• Semi-auto tracing
• One click tracing
• ROI shape interpolation
• File format
• Main shortcuts
• Updates history