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BayesSpace's compatibility with Imaging-based ST #125

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rocketeer1998 opened this issue Jun 24, 2024 · 0 comments
Open

BayesSpace's compatibility with Imaging-based ST #125

rocketeer1998 opened this issue Jun 24, 2024 · 0 comments

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@rocketeer1998
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Hi @msto @nturaga @edward130603 @lshep @senbaikang , thanks for your contribution to this great tool! As the field of ST is fastly growing, I'd like to test BayesSpace on my MERFISH dataset which belongs to Imaging-based ST where the cells locate in a truly biological manner rather than predesigned grid like Visium. So how can I tune corresponding parameters to run? Issue #85 provided a solution to get started. But I can't proceed because I modified this code block though it threw me an error which said,

Error in cluster(Y, q, df_j, init = init, model = model, precision = precision,  : 
  object 'iterate_t' not found

Have you updated your codes to suit this kind of analysis where the only difference is the number of neighbors?

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