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added check_file_status() for input_table #931

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merged 4 commits into from
Apr 13, 2015

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safay
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@safay safay commented Apr 13, 2015

Added file status checking check_file_status() for args.input_table in filter_abund.py
Not a documented issue, but found it while examining code for another issue.

  • Is it mergable?
  • Did it pass the tests?
  • If it introduces new functionality in scripts/ is it tested?
    Check for code coverage.
  • Is it well formatted? Look at make pep8, make diff_pylint_report,
    make cppcheck, and make doc output. Use make format and manual
    fixing as needed.
  • Did it change the command-line interface? Only additions are allowed
    without a major version increment. Changing file formats also requires a
    major version number increment.
  • Is it documented in the ChangeLog?
  • Was a spellchecker run on the source code and documentation after
    changes were made?

@ged-jenkins
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Can one of the admins verify this patch?

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@ged-jenkins
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Can one of the admins verify this patch?

@safay
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safay commented Apr 13, 2015

@mr-c:
ready for your review!

@@ -3,6 3,10 @@
* scripts/abundance-dist.py: disambiguate documentation for force and
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2015-04-13 Scott Fay <[email protected]>
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At the top of the file, please :-)
Two spaces between your name and the date; two spaces between your name and your bracketed email address. Thanks!

@mr-c
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mr-c commented Apr 13, 2015

Otherwise, this looks good to me!

@safay
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safay commented Apr 13, 2015

@mr-c: okay, changed to the true change history, sorry about that!

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mr-c commented Apr 13, 2015

Jenkins, ok to test

mr-c added a commit that referenced this pull request Apr 13, 2015
@mr-c mr-c merged commit 761e10d into dib-lab:master Apr 13, 2015
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mr-c commented Apr 13, 2015

@safay Congratulations on your first commit to the khmer project! Your name will be included in the release notes for the next version and you'll be listed amongst our other contributors in the next software release paper.

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3 participants