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@d3b-center

D3b

Center for Data Driven Discovery in Biomedicine at the Children"s Hospital of Philadelphia

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  1. bixtools bixtools Public

    🐳 Dockerfiles for bioinformatics tools

    Dockerfile 16 4

  2. d3b-cli-igor d3b-cli-igor Public

    All-purpose CLI tool for D3b Center and partner orgs

    Python

Repositories

Showing 10 of 140 repositories
  • image-deid-etl Public

    A WIP tool to assist with reading DICOM images from Orthanc, conversion to anonymized NIfTI images, and uploading to Flywheel.

    d3b-center/image-deid-etl’s past year of commit activity
    Python 3 Apache-2.0 0 22 0 Updated Jan 24, 2025
  • d3b-release-maker Public

    🛠 Tool to generate GitHub-based software releases with semantic versioning tags

    d3b-center/d3b-release-maker’s past year of commit activity
    Python 0 Apache-2.0 1 1 1 Updated Jan 17, 2025
  • pLGG_imaging_clustering_genomic Public
    d3b-center/pLGG_imaging_clustering_genomic’s past year of commit activity
    HTML 0 Apache-2.0 0 1 0 Updated Jan 15, 2025
  • bixtools Public

    🐳 Dockerfiles for bioinformatics tools

    d3b-center/bixtools’s past year of commit activity
    Dockerfile 16 4 0 0 Updated Jan 9, 2025
  • OpenPedCan-analysis Public Forked from AlexsLemonade/OpenPBTA-analysis

    The analysis repository for the Open Pediatric Cancer Project

    d3b-center/OpenPedCan-analysis’s past year of commit activity
    HTML 20 84 2 0 Updated Jan 3, 2025
  • pLGG-immune-clinicoradiomics Public
    d3b-center/pLGG-immune-clinicoradiomics’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 0 Updated Dec 16, 2024
  • peds-brain-auto-skull-strip Public

    Docker for automated skull stripping for pediatric brain tumor subjects

    d3b-center/peds-brain-auto-skull-strip’s past year of commit activity
    Python 0 0 0 0 Updated Dec 16, 2024
  • peds-brain-auto-seg-public Public

    D3b PedsBrainAutoSeg tool (public realease)

    d3b-center/peds-brain-auto-seg-public’s past year of commit activity
    7 0 0 0 Updated Dec 16, 2024
  • peds-brain-seg-pipeline-public Public

    Preprocessing and automatic tumor segmentation for pediatric brain tumor subjects

    d3b-center/peds-brain-seg-pipeline-public’s past year of commit activity
    3 1 0 1 Updated Dec 16, 2024
  • d3b-cli-igor Public

    All-purpose CLI tool for D3b Center and partner orgs

    d3b-center/d3b-cli-igor’s past year of commit activity
    Python 0 0 1 0 Updated Dec 10, 2024
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