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@complextissue

Complex Tissue lab

Research group led by Prof. Victor Puelles, PhD, at Aarhus University.

Welcome to our GitHub page. We are a research group at Aarhus University, part of the Department of Clinical Medicine and the Department of Pathology.

Our research focus is the study of complex tissues using advanced imaging techniques and machine learning and AI techniques.

Popular repositories Loading

  1. pytximport pytximport Public

    Feature-rich Python implementation of the tximport package for gene count estimation.

    Python 3

  2. .github .github Public

  3. xpysom xpysom Public

    Forked from Manciukic/xpysom

    XPySom is a minimalistic implementation of batch Self Organizing Map algorithm

    Python

  4. snakemake-bulk-rna-seq-workflow snakemake-bulk-rna-seq-workflow Public

    Snakemake workflow for bulk RNA sequencing with pytximport.

    Python

  5. bioconda-recipes bioconda-recipes Public

    Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    Shell

  6. PyDESeq2 PyDESeq2 Public

    Forked from owkin/PyDESeq2

    A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

    Python

Repositories

Showing 6 of 6 repositories
  • pytximport Public

    Feature-rich Python implementation of the tximport package for gene count estimation.

    complextissue/pytximport’s past year of commit activity
    Python 3 GPL-3.0 0 0 0 Updated Aug 22, 2024
  • snakemake-bulk-rna-seq-workflow Public

    Snakemake workflow for bulk RNA sequencing with pytximport.

    complextissue/snakemake-bulk-rna-seq-workflow’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Aug 22, 2024
  • PyDESeq2 Public Forked from owkin/PyDESeq2

    A Python implementation of the DESeq2 pipeline for bulk RNA-seq DEA.

    complextissue/PyDESeq2’s past year of commit activity
    Python 0 MIT 60 0 0 Updated Jul 31, 2024
  • bioconda-recipes Public Forked from bioconda/bioconda-recipes

    Conda recipes for the bioconda channel.

    complextissue/bioconda-recipes’s past year of commit activity
    Shell 0 MIT 3,207 0 0 Updated Jul 18, 2024
  • xpysom Public Forked from Manciukic/xpysom

    XPySom is a minimalistic implementation of batch Self Organizing Map algorithm

    complextissue/xpysom’s past year of commit activity
    Python 0 GPL-3.0 420 0 0 Updated Sep 20, 2023
  • .github Public
    complextissue/.github’s past year of commit activity
    0 0 0 0 Updated Feb 2, 2023

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