What's Changed

• upgrade major dependencies by @ckmah in #141
• improved SpatialData support, especially multitables and saving metadata by @ckmah in #140
• improved handling edge cases for bt.tl.lp() and downstream methods by @dylanclam12 in #138
• many bug fixes

Full Changelog: 2.1.2...2.1.3

What's Changed

• v2.1.2 by @ckmah in #133
• bump version by @ckmah in #134

Full Changelog: 2.1.1...2.1.2

What's Changed

• Improve robustness and runtime performance after initial SpatialData refactor, streamline test data #128
• re-add test code coverage #126
• bugs #127 #125

Full Changelog: v2.1-alpha...2.1.1

What's Changed

• SpatialData integration and more!

Full Changelog: v2.1-alpha...2.1

What's Changed

• patch bugs affecting tutorials by @ckmah in #98
• V2.0 by @ckmah in #96
• bump version by @ckmah in #99
• RNAflux improvements by @ckmah in #102
• unit tests and plotting bugs by @ckmah in #106
• add rich and bump version by @ckmah in #107

Full Changelog: v2.0.0a0...v2.1-alpha

What's Changed

@ckmah in #96

Major release aligned with version 2 of the preprint 🎉

Overall goals for this upgrade:

• 3 core analyses: RNAforest (spatial patterns), RNAflux (spatial gradient embedding), Colocation analysis (cell, gene and compartment aware)
• break up monolith plotting function into separate functions for plotting each "layer"
• speed up shape and point feature computations
• more granular tutorials
• technical docs
• general stability

Full Changelog: v1.0.1...v2.0.0

Changes

• auto generate api documentation
• auto publish to pypi