C library and cmdline tools for parsing and manipulating VCF files with python and zig bindings

Genome Instability Pipeline

Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)

Tools to process and analyze deep sequencing data.

This is the development home of the workflow management system Snakemake. For general information, see

The #StayTheFuckHome Website

HPC Python lesson materials

Generator-based operators for asynchronous iteration

Parse and process FASTA and FASTQ formatted files of biological sequences.

A grammar of graphics for Python

HMMER: biological sequence analysis using profile HMMs

RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data

Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the …

Statistical data visualization using matplotlib

My fork to test things with biopython.

Python3 wrapper for GATB-Core.

A place to submit conda recipes before they become fully fledged conda-forge feedstocks

Next Generation Sequencing libraries in Python

Small utilities for working with fastq sequence files.

Conda recipes for the bioconda channel.

A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution

Tools (written in C using htslib) for manipulating next-generation sequencing data

Code documentation written as code! How novel and totally my idea!