Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

simplify obo ingest #49

Closed
cmungall opened this issue May 24, 2021 · 2 comments
Closed

simplify obo ingest #49

cmungall opened this issue May 24, 2021 · 2 comments

Comments

@cmungall
Copy link
Contributor

there is a lot going on in the obofoundry ingester, including doing checkouts of repos, checking if an obo file is there..

I think this is all uneccessary, we probably have not done a good job of advertising the right way to collect metadata from obo
@cmungall cmungall mentioned this issue May 24, 2021
Merged
@cthoyt
Copy link
Member

cthoyt commented May 24, 2021 •
edited
Loading

I would love to see some of this metadata better organized on the OBO side, or if it's already available in a structured way, I can greatly reduce this code :)

@cthoyt
Copy link
Member

cthoyt commented Jun 7, 2021

I updated the way OBO Foundry's registry is ingested in #80. Now it's much more slick in how it grabs the download URLs for OWL, OBO, and OBO Graph JSON. The downside is without all of this complicated checking, there's still no explicit field denoting the github/source control repository (though it could maybe be inferred from other fields like the issue tracker for a large portion)

@cthoyt cthoyt closed this as completed Jun 7, 2021
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees
No one assigned
Labels
None yet
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@cmungall @cthoyt