Merge pull request #553 from bactopia/dev

bump to v3.1.0

Merge pull request #497 from bactopia/dev

update bactopia to v3.0.1

Merge pull request #440 from bactopia/rpetit3-patch-1

ignore prokka_debug parameter

add base image to build

Merge pull request #344 from bactopia/dev

Bump to v2.1.0

Merge pull request #332 from bactopia/dev

bump to v2.1.0

Update CHANGELOG.md

update amrfinder tests

bump to v2.0.1

Merge branch 'master' of github.com:bactopia/bactopia