Bio-Wrangler is a Python package for bioinformatics data wrangling. It helps load, filter, merge, and summarize bioinformatics datasets from formats like FASTA, FASTQ, VCF, and GFF.

Python library for array programming on biological datasets. Documentation available at: https://bionumpy.github.io/bionumpy/

This repo collects the list of learning online resources related to microbiome computational science and tools.

A plugin for qiime2 that runs ITSxpress

Software to trim the ITS region of FASTQ sequences for amplicon sequencing analysis

A bioinformatics extension of Hugging Face's 🤗 datasets library, built for ML applications on biological and omics data, offering easy integration of metadata and low-code data management tools.

Unix, R and python tools for genomics and data science

Turns Data and AI algorithms into production-ready web applications in no time.

Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on spar…

This repository contains the python package for Helical

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

A topic-centric list of HQ open datasets.

ggplot2: elegant graphics for data analysis

Differential abundance (DA) and correlation analyses for microbial absolute abundance data

Archive: Data, scripts, and outputs for the Nat. Comm. paper "Analysis of Composition of Microbiomes with Bias Correction". Please check our ANCOMBC R package for the most up-to-date ANCOM-BC funct…

R Interface to Python

🌈 Interactive analysis of metagenomics data

Code for "Next-generation data filtering in the genomics era"

📚 Tools and databases for analyzing HLA and VDJ genes.

T/B cell receptor sequencing analysis notes

Text and code for the forthcoming second edition of Think Bayes, by Allen Downey.

Repository for Advanced Data Science Book

Polars Cookbook, Published by Packt

Scripts run during processing and analysis of Inspiration4 omics data.

InMoose is the INtegrated Multi Omic Open Source Environment. It is a collection of tools for the analysis of omic data.

A list of interesting genome browser or genome-browser-like implementations

Qdrant - High-performance, massive-scale Vector Database for the next generation of AI. Also available in the cloud https://cloud.qdrant.io/