Skip to content
@algbio

Algorithmic Bioinformatics Group @ University of Helsinki

Popular repositories Loading

  1. ggcat ggcat Public

    Compacted and colored de Bruijn graph construction and querying

    Rust 72 10

  2. themisto themisto Public

    Space-efficient pseudoalignment with a colored de Bruijn graph

    C 50 4

  3. GraphChainer GraphChainer Public

    An accurate aligner of long reads to a variation graph, based on co-linear chaining

    C 27 4

  4. SBWT SBWT Public

    Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)

    C 23 6

  5. matchtigs matchtigs Public

    Minimum plain text representation of kmer sets

    Rust 16 5

  6. emerald emerald Public

    EMERALD calculates safety-windows by exploring the suboptimal alignment space

    C 16

Repositories

Showing 10 of 37 repositories
  • panvc3-experiments Public

    Experiments for evaluating PanVC 3

    algbio/panvc3-experiments’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Aug 26, 2024
  • matchtigs Public

    Minimum plain text representation of kmer sets

    algbio/matchtigs’s past year of commit activity
    Rust 16 BSD-2-Clause 5 0 0 Updated Aug 26, 2024
  • algbio/optimized-fd’s past year of commit activity
    Python 2 0 0 0 Updated Aug 25, 2024
  • ggcat Public

    Compacted and colored de Bruijn graph construction and querying

    algbio/ggcat’s past year of commit activity
    Rust 72 MIT 10 10 0 Updated Aug 23, 2024
  • themisto Public

    Space-efficient pseudoalignment with a colored de Bruijn graph

    algbio/themisto’s past year of commit activity
    C 50 GPL-2.0 4 12 0 Updated Aug 22, 2024
  • SBWT Public

    Code for the paper Succinct k-mer Set Representations Using Subset Rank Queries on the Spectral Burrows-Wheeler Transform (SBWT)

    algbio/SBWT’s past year of commit activity
    C 23 GPL-2.0 6 0 0 Updated Aug 18, 2024
  • Badger Public

    Badger is a long read barcode calling tool

    algbio/Badger’s past year of commit activity
    Python 0 GPL-2.0 0 0 0 Updated Aug 16, 2024
  • panvc-sample-workflow Public

    Sample variant calling workflow using short reads for PanVC

    algbio/panvc-sample-workflow’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Aug 15, 2024
  • algbio/GraphChainer-scripts’s past year of commit activity
    Python 0 0 0 0 Updated Aug 9, 2024
  • flowtigs Public
    algbio/flowtigs’s past year of commit activity
    Rust 0 BSD-2-Clause 0 0 0 Updated Aug 9, 2024

People

This organization has no public members. You must be a member to see who’s a part of this organization.

Most used topics

Loading…