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RMSF-net Public
Forked from XintSong/RMSF-netPython GNU General Public License v3.0 UpdatedJul 9, 2024 -
EVE_fork Public
Forked from loodvn/EVEOfficial repository for the paper "Large-scale clinical interpretation of genetic variants using evolutionary data and deep learning". Joint collaboration between the Marks lab and the OATML group.
Python MIT License UpdatedSep 19, 2023 -
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dgl-lifesci Public
Forked from awslabs/dgl-lifesciPython package for graph neural networks in chemistry and biology
Python Apache License 2.0 UpdatedOct 31, 2022 -
bio-transformers Public
Forked from DeepChainBio/bio-transformersbio-transformers is a wrapper on top of the ESM/Protbert model, trained on millions on proteins and used to predict embeddings.
Python Apache License 2.0 UpdatedSep 30, 2022 -
IsoSeq Public
Forked from PacificBiosciences/IsoSeqIsoSeq3 - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
BSD 3-Clause Clear License UpdatedAug 30, 2022 -
ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformers Public
Forked from KrishnaswamyLab/ReLSO-Guided-Generative-Protein-Design-using-Regularized-Transformersa Transformer-based neural network for generating highly optimized protein sequences called Regularized Latent Space Optimization (RELSO)
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pySAR_proteinseq_aa Public
Forked from amckenna41/pySARAnalysing Sequence Activity Relationships (SARs) of protein sequences and their mutants using Machine Learning.
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SEMAi Public
Forked from AIRI-Institute/SEMAiSpatial Epitope Modeling with Artificial intelligence (SEMA)
Jupyter Notebook UpdatedJun 16, 2022 -
deepvariant Public
Forked from google/deepvariantDeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.
Python BSD 3-Clause "New" or "Revised" License UpdatedJun 13, 2022 -
pbsv Public
Forked from PacificBiosciences/pbsvpbsv - PacBio structural variant (SV) calling and analysis tools
Python BSD 3-Clause Clear License UpdatedApr 23, 2022 -
aaindex Public
Forked from amckenna41/aaindexPython package for AAIndex database (https://www.genome.jp/aaindex/)
Python MIT License UpdatedMar 30, 2022 -
rRNA_nanoSHAPE Public
Forked from physnano/rRNA_nanoSHAPECode accompanying "Direct detection of RNA modifications and structure using single molecule nanopore sequencing"
Jupyter Notebook GNU General Public License v3.0 UpdatedMar 4, 2022 -
EpiNano Public
Forked from novoalab/EpiNanoDetection of RNA modifications from Oxford Nanopore direct RNA sequencing reads (Liu*, Begik* et al., Nature Comm 2019)
Python GNU General Public License v2.0 UpdatedFeb 22, 2022 -
biotools Public
Forked from jdidion/biotoolsA list of useful bioinformatics resources
UpdatedFeb 21, 2022 -
xpore Public
Forked from GoekeLab/xporeIdentification of differential RNA modifications from nanopore direct RNA sequencing
Python MIT License UpdatedFeb 10, 2022 -
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deeplearning-models Public
Forked from rasbt/deeplearning-modelsA collection of various deep learning architectures, models, and tips
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scientific-python-cookiecutter Public
Forked from NSLS-II/scientific-python-cookiecuttera tutorial and 'cookiecutter' template for a scientific Python library
Python BSD 3-Clause "New" or "Revised" License UpdatedJan 19, 2022 -
strelka Public
Forked from Illumina/strelkaStrelka2 germline and somatic small variant caller
C GNU General Public License v3.0 UpdatedDec 29, 2021 -
smrtsv2 Public
Forked from EichlerLab/smrtsv2Structural variant caller for PacBio
Python MIT License UpdatedDec 8, 2021 -
tombo Public
Forked from nanoporetech/tomboTombo is a suite of tools primarily for the identification of modified nucleotides from raw nanopore sequencing data.
Python Other UpdatedNov 11, 2021 -
Enrich2 Public
Forked from FowlerLab/Enrich2Tool for deep mutational scanning experiments.
Python BSD 3-Clause "New" or "Revised" License UpdatedSep 22, 2021 -
deeplexicon Public
Forked from Psy-Fer/deeplexiconSignal based nanopore RNA demultiplexing with convolutional neural networks
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Genomic-ULMFiT Public
Forked from kheyer/Genomic-ULMFiTULMFiT for Genomic Sequence Data
Jupyter Notebook UpdatedAug 25, 2021 -
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awesome-awesomeness Public
Forked from bayandin/awesome-awesomenessA curated list of awesome awesomeness
UpdatedAug 10, 2021 -
configurations-linux Public
Forked from ahmadassaf/configurations-linuxMy Linux Machine Configurations
Perl UpdatedAug 5, 2021 -
dms_tools2 Public
Forked from jbloomlab/dms_tools2software for the analysis and visualization of deep mutational scanning data
Python GNU General Public License v3.0 UpdatedJul 6, 2021 -
ASHURE Public
Forked from BBaloglu/ASHUREPython-based pipeline for analyzing Nanopore sequencing metabarcoding data
Jupyter Notebook GNU Lesser General Public License v3.0 UpdatedJun 28, 2021