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13 Open 62 Closed
13 Open 62 Closed
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Issues list

Pipeline failing with older fastq file
#216 opened Aug 13, 2024 by RuanSpies21
@abhi18av
20
MINOR_VARIANTS_ANALYSIS_WF:TBPROFILER_VCF_PROFILE__LOFREQ error on conda config
#207 opened Jul 11, 2024 by Mxrcon
@Mxrcon
1
Transition to nf-core standard for pipeline and documentation
#188 opened Mar 18, 2024 by abhi18av
@abhi18av @Mxrcon
Standardisation of MGIT-sputum-culture pairs enhancement New feature or request
#166 opened Aug 9, 2023 by vrennie
1
Speeding up minor variants analysis enhancement New feature or request
#165 opened Aug 9, 2023 by vrennie
2
Add info about the sequencing tech TAG and reflect that on the reports enhancement New feature or request
#150 opened Apr 4, 2023 by abhi18av
@abhi18av
7
Remove old fastq.STATUS.tsv files
#144 opened Feb 20, 2023 by LennertVerboven
Thread for possible enhancements in future enhancement New feature or request good first issue Good for newcomers help wanted Extra attention is needed wish list
#120 opened Aug 30, 2022 by abhi18av
16
[Input samplesheet validation] Sample names with point can result in accidental sample merge
#102 opened May 24, 2022 by TimHHH v1.0.0
1
@abhi18av
5
Publish a condensed MultiQC report with the relevant statistics enhancement New feature or request priority
#99 opened May 17, 2022 by abhi18av v1.2.0
2
@abhi18av @Mxrcon
7
Coordinates for Structural Varinats in DR (post-release small issues)
#93 opened Mar 28, 2022 by TimHHH
@TimHHH
5
Retry the GATK_VARIANT_RECALIBRATOR with reduced gaussians on failure documentation Improvements or additions to documentation
#73 opened Feb 10, 2022 by abhi18av v0.9.8
2
Plan out the documentation documentation Improvements or additions to documentation
#36 opened Nov 16, 2021 by abhi18av
1 of 3 tasks
3
@abhi18av @Mxrcon
5
ProTip! Follow long discussions with comments:>50.