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NeuroML

Repositories for the NeuroML language specification and supporting software libraries

NeuroML

NeuroML is an international, collaborative initiative to develop a language for describing detailed models of neural systems, which will serve as a standard data format for defining and exchanging descriptions of neuronal cell and network models. NeuroML is:

  • modular
  • standardised
  • structured

and this allows you to:

  • easily build detailed models of neural systems
  • easily validate your models
  • easily visualise your models
  • easily simulate your models using a variety of simulators
  • easily analyse your simulations

all using a well supported set of tools in the powerful Python programming language.

https://docs.neuroml.org

For an overview of the core NeuroML repositories and the status of tests on these see here.

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  1. NeuroML2 NeuroML2 Public

    This repository hosts the NeuroML 2 Schema, the ComponentType definitions in LEMS and the core documentation of NeuroML2.

    Python 50 24

  2. pyNeuroML pyNeuroML Public

    A single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.

    Python 36 30

  3. jNeuroML jNeuroML Public

    A single package (command line tool and library) in Java to validate, simulate, translate and analyse NeuroML 2 models

    Java 8 20

  4. NeuroMLWebsite NeuroMLWebsite Public

    The NeuroML homepage. Note: main NeuroML docs now at https://docs.neuroml.org & source of those at https://github.com/NeuroML/Documentation

    HTML 3 2

  5. Presentations Presentations Public

    Presentation slides related to NeuroML & LEMS

  6. NeuroMLlite NeuroMLlite Public

    Work towards creating a common JSON based format for compact network specification

    Python 11 10

Repositories

Showing 10 of 27 repositories
  • Documentation Public

    Source repository for NeuroML documentation.

    NeuroML/Documentation’s past year of commit activity
    Jupyter Notebook 10 8 25 (5 issues need help) 1 Updated Aug 16, 2024
  • pyNeuroML Public

    A single package in Python unifying scripts and modules for reading, writing, simulating and analysing NeuroML2/LEMS models.

    NeuroML/pyNeuroML’s past year of commit activity
    Python 36 LGPL-3.0 30 48 (8 issues need help) 11 Updated Aug 14, 2024
  • jNeuroML Public

    A single package (command line tool and library) in Java to validate, simulate, translate and analyse NeuroML 2 models

    NeuroML/jNeuroML’s past year of commit activity
    Java 8 LGPL-3.0 20 14 1 Updated Aug 13, 2024
  • org.neuroml.import Public

    Import other formats into LEMS & combine with NeuroML models

    NeuroML/org.neuroml.import’s past year of commit activity
    Java 1 LGPL-3.0 1 2 1 Updated Aug 13, 2024
  • org.neuroml.export Public

    Export from NeuroML & LEMS

    NeuroML/org.neuroml.export’s past year of commit activity
    Java 8 LGPL-3.0 10 14 3 Updated Aug 13, 2024
  • org.neuroml.model Public

    NeuroML v2 Java API

    NeuroML/org.neuroml.model’s past year of commit activity
    Java 5 LGPL-3.0 3 3 1 Updated Aug 13, 2024
  • org.neuroml1.model Public

    NeuroML v1 Java Model API

    NeuroML/org.neuroml1.model’s past year of commit activity
    Java 2 LGPL-3.0 2 0 1 Updated Aug 13, 2024
  • NeuroML2 Public

    This repository hosts the NeuroML 2 Schema, the ComponentType definitions in LEMS and the core documentation of NeuroML2.

    NeuroML/NeuroML2’s past year of commit activity
    Python 50 LGPL-3.0 24 61 3 Updated Aug 13, 2024
  • org.neuroml.model.injectingplugin Public

    NeuroML JAXB plug-in to inject code during code generation from schema

    NeuroML/org.neuroml.model.injectingplugin’s past year of commit activity
    Java 1 LGPL-3.0 3 0 1 Updated Aug 13, 2024
  • Cvapp-NeuroMorpho.org Public

    Version of Cvapp as used on NeuroMorpho.org. Based on Robert Cannon's initial implementation.

    NeuroML/Cvapp-NeuroMorpho.org’s past year of commit activity
    XSLT 14 7 0 0 Updated Jul 1, 2024

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