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Writing out sub-mzML files fail on timsTOF data #1417
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Yes, that is on purpose. I see that your input seems to be from timsTOF? We never tested that, but I think I can let FragPipe read the uncalibrated.mzML for this case. But then, there will be no MS1 for the quantification. BTW, the Best, Fengchao |
Enabling writing sub-mzML fails with FragPipe v21 when the source MS data file is not an mzML file, but does work on v20.
The relevant snippet from the log file is:
The root cause is at
FragPipe/MSFragger-GUI/src/com/dmtavt/fragpipe/util/WriteSubMzml.java
Lines 96 to 110 in cb80ec8
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