MetaWRAP - a flexible pipeline for genome-resolved metagenomic data analysis

ggplot2: elegant graphics for data analysis

Quorum sensing gene database for archaea and bacteria

Database of genomes integrated from the gut microbiome and other environments

This is a comprehensive database for fast and accurately analyzing the phosphorus cycling genes.

CyanoSeq: A curated cyanobacterial 16S rRNA database for next-generation sequencing

Microbial soil diversity in organica almond orchards compared to conventional management

Exploring the phylogenetic and metabolic diversity of microbial mercury methylation

COBRApy is a package for constraint-based modeling of metabolic networks.

Repository for code shared be presenters in the EFI hosted Statistical Methods Seminar Series

Genome Association Predict Integrate Tools

Python library to handle Gene Ontology (GO) terms

ggplot2 themes and palettes based on your favorite TV shows

Official release of the NUFEB software

Combined de novo transcriptome assembly - multiple assemblers - multiple parameters

A complete pipeline for metagenomic analysis

R package for microbiome biomarker discovery

Add a convex hull geom to ggplot2

A deep learning based bioinformatics project on epigenetics in Type 2 Diabetes.

Analysis and supplemental data for ImmunoChip analysis of type 1 diabetes

Grinder is a versatile open-source bioinformatic tool to create simulated omic shotgun and amplicon sequence libraries for all main sequencing platforms.

CAMISIM: Simulating metagenomes and microbial communities

mapping files for MetaCyc pathway

Learning Vim and Vimscript doesn't have to be hard. This is the guide that you're looking for 📖

Learning Vim. A Hands-On Tutorial of Vim.

无废话极简版Vim学习笔记！文章按主题分拆为多个章节，并尽量控制每节的信息量；通过文字色彩和字体，将命令、快捷键突出显示；在每节结尾，提供一个命令列表，以便回顾文中介绍的重要命令。如果这些文章能对喜欢Vim的朋友有所益处，我将不胜荣幸。

SIB/Scilifelab autumn school in single cell omics 2019.

Semi-parametric Rank-Based Correlation and Partial Correlation Estimation for Quantitative Microbiome Data