Open-Source package for segmentation and analysis of gel electrophoresis images using machine learning. Both a python framework for training/running models and a QuPath GUI extension are available.

Interactive roadmaps, guides and other educational content to help developers grow in their careers.

A self-hosted, Markdown file based task management board

Replace Copilot local AI

High-level API for attractive and descriptive image visualization in Python

Next-gen fast plotting library running on WGPU using the pygfx rendering engine

Particle tracking by solving linear assignment problem.

Visualizing feature measurements on label images in napari

CLI to pack your PyApps automatically

The repository provides code for running inference with the Meta Segment Anything Model 2 (SAM 2), links for downloading the trained model checkpoints, and example notebooks that show how to use th…

Runtime installer for Python applications

Scientific image analysis resources and examples.

A fully AI-generated Jupyter book about Python basics

A lightweight plugin extending label layer control.

Local version of samba-web, a trainable segmentation web app with deep learning powered labelling

A minimal dependency napari plugin giving access to scikit-image functions

A curated list of awesome Jupyter projects, libraries and resources

A python package for fitting splines.

VS Code in the browser

Master programming by recreating your favorite technologies from scratch.

Generating label images from SAM predictions

Guide to python package development for scientists

An open source, self-hosted platform for sharing and managing your most frequently used links. Easily create customizable, human-readable shortcuts to streamline your link management.

Accurate and efficient spot detection for microscopy data

Run a Linux Desktop on a JupyterHub

Turn repositories into Jupyter-enabled Docker images