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HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
A shiny application to visualize MCscan result
High-fidelity 5mC DNA methylation detection model for PacBio HiFi reads
Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.
A tool for performing collinearity-incorporating homology inference
A genome visualization python package for comparative genomics
Cross-platform software to draw phylogenetic trees
HapHiC: a fast, reference-independent, allele-aware scaffolding tool based on Hi-C data
The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support
🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
Cython bindings and Python interface to MUSCLE v5, a highly efficient and accurate multiple sequence alignment software.
R Package of Geospatial Shapefile of China Administrative Divisions to the County/District-Level.
Remove CCS reads with remnant PacBio adapter sequences and convert outputs to a compressed .fastq (.fastq.gz).
Resistance Gene Identifier (RGI). Software to predict resistomes from protein or nucleotide data, including metagenomics data, based on homology and SNP models.
Accurate Species Tree EstimatoR: a family of optimation algorithms for species tree inference (including ASTRAL & CASTER)
A versatile compressor of third generation sequencing reads.
Analyzing and visualizing KEGG information using the grammar of graphics
A web-based, interactive pangenome visualization tool
Use ChatGPT to summarize the arXiv papers. 全流程加速科研，利用chatgpt进行论文全文总结 专业翻译 润色 审稿 审稿回复
De novo chromosome-level scaffolding and phasing tool using Hi-C
Using Deep Learning to predict gene annotations