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15 Open 144 Closed
15 Open 144 Closed
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Issues list

Could not successfully run smudgeplot.py plot with the kmer pairs (KMC)
#172 opened Nov 10, 2024 by hungweichen0327
1
Error occurred when computing the set of kmer pairs
#171 opened Nov 8, 2024 by hungweichen0327
How is 1n coverage determined?
#167 opened Oct 24, 2024 by mclaugsf
1
bash: PloidyPlot: command not found... 0.3.0 Oriel Upcoming version of smudgeplot bug Something isn't working
#165 opened Oct 19, 2024 by yaradua
27
Smudgeplot interpretation - allopolyploid or coverage too low?
#164 opened Oct 16, 2024 by RSchley
2
plot err 0.3.0 Oriel Upcoming version of smudgeplot 0.9.9 Sliding For the future release of sploidyplot_obj branch data included for issues with .smu file potential problems for potential problems given different scenarios (How does XXX infulence sumdgeplot?) smudgeplot included if smudgeplot was posted with the quesiton / problem
#146 opened Apr 10, 2024 by zskey-zn
@KamilSJaron
6
Process was automatically killed 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version performance issues regarding scalability and performance of the method.
#136 opened Nov 2, 2023 by yanjw123
3
Request for feedback on smudgeplot optimization and interpretation (diploid? haploid?) 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version 0.3.0 Oriel Upcoming version of smudgeplot genomescope included smudgeplot included if smudgeplot was posted with the quesiton / problem
#133 opened Sep 13, 2023 by margaretc-ho
6
Prepare a testing battery 0.9.9 Sliding For the future release of sploidyplot_obj branch dev for issues related to development branch genomescope included smudgeplot included if smudgeplot was posted with the quesiton / problem
#127 opened Aug 22, 2023 by KamilSJaron
@KamilSJaron
1
Interpreting smudgeplot output 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version 0.3.0 Oriel Upcoming version of smudgeplot genomescope included smudgeplot included if smudgeplot was posted with the quesiton / problem
#117 opened Jun 12, 2023 by eweinheimer
10
half genome length from tutorial-strawberry genomescope included potential problems for potential problems given different scenarios (How does XXX infulence sumdgeplot?) smudgeplot included if smudgeplot was posted with the quesiton / problem
#84 opened Mar 2, 2021 by fancyge
4
Using smudgeplot with very high ploidy levels smudgeplot included if smudgeplot was posted with the quesiton / problem
#66 opened Jul 31, 2020 by cmdoret
4
Update wiki 0.3.0 Oriel Upcoming version of smudgeplot
#54 opened May 20, 2020 by KamilSJaron
3 tasks
@KamilSJaron
2
Bad examples of smudgeplot smudgeplot included if smudgeplot was posted with the quesiton / problem
#37 opened May 15, 2019 by KamilSJaron
3
set up travis testing performance issues regarding scalability and performance of the method.
#8 opened Aug 24, 2018 by KamilSJaron
@KamilSJaron
1
ProTip! Adding no:label will show everything without a label.