lsaBGC - suite for pan-BGC-omics analysis

zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

This repository contains a script for training a machine learning model to classify images into categories. The model is trained on custom images provided by the user.

codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.

Code for data analysis and figures for the manuscript "Discovering the Microbial Community and Antifungals within the Porcine Skin Microbiome" by K. De La Cruz and E.C. Townsend et al.

Code for data analysis and figures for the manuscript "Still Not Sterile: Chlorhexidine gluconate does not completely reduce skin microbial bioburden and promotes pathogen overabundance in patients undergoing elective surgeries" by E.C. Townsend et al.

Misc. code & scripts associated with the zol & fai manuscript.

Code for data analysis and figures for the manuscript "What is Slough? Defining the proteomic and microbial composition of wound slough and its implications for wound healing" by E.C. Townsend et al.

Code for data analysis and figures for the manuscript "Key aspects of papillomavirus infection influence the host cervicovaginal microbiome in a preclinical murine papillomavirus (MmuPV1) infection model" by M.E. Spurgeon and E.C. Townsend et al.