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Commits on Oct 27, 2022

• update readme with dependencies

  JustinChu

  committed
  b15667b

• include scripts in makefile

  JustinChu

  committed
  0b6a815

• remove unneeded scripts

  JustinChu

  committed
  22ab313

• keep consistent ordering (sorted)

  JustinChu

  committed
  1e7cb69

• sort by snps for consistent ordering

  JustinChu

  committed
  acc2201

Commits on Oct 26, 2022

• fix typo

  JustinChu

  committed
  5a5932c

• update version number

  JustinChu

  committed
  3b62703

• update readme for for new generate sites script

  JustinChu

  committed
  9b20360

• update to current snp set

  JustinChu

  committed
  030676f

• functional pipeline for generating sites from VCF and reference

  JustinChu

  committed
  602c6b1

Commits on Oct 24, 2022

• bugfix

  JustinChu

  committed
  620cd1b

• bugfix

  JustinChu

  committed
  148f349

• accept interleaved file of sites

  JustinChu

  committed
  603b715

• make headers of fasta unique

  JustinChu

  committed
  d988e65

• k-mer filtering perl script change to output single interleaved file

  JustinChu

  committed
  d451c25

Commits on Oct 7, 2022

• remove unused variable

  JustinChu

  committed
  5d0035e

Commits on Sep 28, 2022

• use 3.1*10^9 rather than 3*10^9 for default genome size

  

  cjustin

  authored and

  cjustin

  committed
  f1e7ac4

Commits on Sep 27, 2022

• add options for error rate code

  

  cjustin

  authored and

  cjustin

  committed
  cf49102

Commits on Sep 23, 2022

• Error Rate code validation

  

  cjustin

  authored and

  cjustin

  committed
  ef6e07a

Commits on Sep 21, 2022

• approximate error rate working (not sure formulation is correct)

  

  cjustin

  authored and

  cjustin

  committed
  dfcec6f

• just some const correctness

  

  cjustin

  authored and

  cjustin

  committed
  a5b2f1e

• should be unsigned not double

  

  cjustin

  authored and

  cjustin

  committed
  6946e0b

• fix time memory output formatting

  

  cjustin

  authored and

  cjustin

  committed
  6048b87

Commits on Sep 20, 2022

• change default coverage skew value

  

  cjustin

  authored and

  cjustin

  committed
  fb4093e

• bugfix ibs0

  

  cjustin

  authored and

  cjustin

  committed
  c0d82e9

• store coverage in a double

  

  cjustin

  authored and

  cjustin

  committed
  aa7d93c

• trying to make compiler happy

  

  cjustin

  authored and

  cjustin

  committed
  705a898

• bugfix options (maxCov vs covThresh)

  

  cjustin

  authored and

  cjustin

  committed
  4b8f9be

• relatedness meterics and header in output

  

  cjustin

  authored and

  cjustin

  committed
  a863af9

Commits on Sep 16, 2022

• get error rate code working

  

  cjustin

  authored and

  cjustin

  committed
  8a47543

• fix count output

  

  cjustin

  authored and

  cjustin

  committed
  808c6e9

Commits on Sep 15, 2022

• add error rate to output

  

  cjustin

  authored and

  cjustin

  committed
  82ec86b

Commits on Sep 13, 2022

• formatting

  

  cjustin

  authored and

  cjustin

  committed
  ed55496

• add minimum coverage threshold of 1

  

  cjustin

  authored and

  cjustin

  committed
  59bf442

Commits on Sep 6, 2022

• similarity calculation

  

  cjustin

  authored and

  cjustin

  committed
  4108c7f

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