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PySMO: fix warnings #1472

Merged
merged 25 commits into from
Aug 23, 2024
Merged

PySMO: fix warnings #1472

merged 25 commits into from
Aug 23, 2024

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OOAmusat
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@OOAmusat OOAmusat commented Aug 17, 2024

Fixes

#1403, #1363

Summary/Motivation:

Recent changes to the numpy backend have resulted in a large number of deprecation warnings (>7500) being raised in PySMO. This PR makes changes to address these warnings.

Changes proposed in this PR:

  • Fix all numpy deprecation warnings, primarily arising from assigning scalar values to arrays, e.g., y[i, 0] = x. This is resolved in this PR by either extracting the specific elements of the scalar (y[i, 0] = x[0]) or using the item method (y[i, 0] = x.item())
  • Replacing warnings.warn with the idaes logger warnings, and fix tests to use caplog to reflect this change
  • Adding @pytest.mark.filterwarnings to specific tests to ignore runtime warnings around np.log

Legal Acknowledgement

By contributing to this software project, I agree to the following terms and conditions for my contribution:

  1. I agree my contributions are submitted under the license terms described in the LICENSE.txt file at the top level of this directory.
  2. I represent I am authorized to make the contributions and grant the license. If my employer has rights to intellectual property that includes these contributions, I represent that I have received permission to make contributions and grant the required license on behalf of that employer.

@OOAmusat OOAmusat marked this pull request as draft August 17, 2024 02:39
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codecov-commenter commented Aug 17, 2024

Codecov Report

Attention: Patch coverage is 95.83333% with 1 line in your changes missing coverage. Please review.

Project coverage is 76.36%. Comparing base (575953b) to head (8577f4e).
Report is 1 commits behind head on main.

Files Patch % Lines
...daes/core/surrogate/pysmo/polynomial_regression.py 85.71% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main    #1472       /-   ##
==========================================
- Coverage   76.36%   76.36%   -0.01%     
==========================================
  Files         394      394              
  Lines       65130    65136        6     
  Branches    14429    14429              
==========================================
  Hits        49737    49740        3     
- Misses      12831    12835        4     
  Partials     2562     2561       -1     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@OOAmusat OOAmusat removed the request for review from rundxdi August 19, 2024 16:52
@OOAmusat OOAmusat marked this pull request as ready for review August 19, 2024 19:20
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@lbianchi-lbl lbianchi-lbl left a comment

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Thanks a lot @OOAmusat. From a quick look through the pytest job output log, I believe this resolves all of the unanticipated warnings from the PySMO submodules (i.e., I wasn't able to spot any).

The only one that looks like it might be related is the following:

image

However, if you feel this belongs outside of PySMO's "jurisdiction", then feel free to disregard and we can address it at a later time.

@ksbeattie ksbeattie added the Priority:Normal Normal Priority Issue or PR label Aug 22, 2024
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@andrewlee94 andrewlee94 left a comment

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This looks good to me. My only questions is just to confirm that the warnings about invalid values in logs is not a sign of underlying issues.

@ksbeattie ksbeattie enabled auto-merge (squash) August 22, 2024 23:41
@lbianchi-lbl lbianchi-lbl merged commit 1fb938f into IDAES:main Aug 23, 2024
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5 participants