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1. USeq USeq Public

   180 Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering, alignment/VCF QC, capture array design, IGV/ DAS2/IGB/UCSC …

   Java 17 4

2. hciR hciR Public

   R package for RNA-seq workflows at HCI

   R 12 1

3. Workflows Workflows Public

   Snakemake workflows for best practice genomic analysis

   Shell 7 4

4. MultiRepMacsChIPSeq MultiRepMacsChIPSeq Public

   Multiple-replica multiple-condition Macs2 ChIPSeq wrapper

   Perl 7 1

5. GQuery GQuery Public

   GQuery is a software tool for rapidly querying large numbers of bgzip compressed, tabix indexed genomic data files e.g. vcf, maf, bed, bedGraph, etc. from multiple species with different genome bui…

   C 2

6. AwsApps AwsApps Public

   Genomic data focused toolkit for working with Amazon AWS S3 and EC2

   Java 1