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ChIP-seq analysis notes from Ming Tang

Python 737 294 Updated Aug 5, 2024

ChIP-seq analysis notes from Ming Tang

Python 1 Updated Apr 29, 2021

Single-cell Transcriptome and Regulome Analysis Pipeline

C 277 76 Updated Mar 6, 2023

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…

Python 424 179 Updated Apr 8, 2024

为GPT/GLM等LLM大语言模型提供实用化交互接口,特别优化论文阅读/润色/写作体验,模块化设计,支持自定义快捷按钮&函数插件,支持Python和C 等项目剖析&自译解功能,PDF/LaTex论文翻译&总结功能,支持并行问询多种LLM模型,支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, m…

Python 64,344 7,961 Updated Sep 23, 2024

This is the alpha version of the CellOracle package

Python 302 53 Updated Sep 9, 2024

Genome scaffolding based on HiC data in heterozygous and high ploidy genomes

Jupyter Notebook 59 12 Updated May 24, 2021

An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

R 362 80 Updated May 21, 2024

ATAC-seq processing pipeline

Shell 31 13 Updated Apr 8, 2022