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1. MM_DNM MM_DNM Public

   Codes and notebooks for the Gleesonlab Meningomyelocele de novo mutation project

   Jupyter Notebook 2 1

2. wxs_pipeline wxs_pipeline Public

   Starting with BAMs and FASTQs, follow GATK 4.0 Best Practices up to generating a joint-genotyped VCF

   Python 1 1

3. pbs-torque pbs-torque Public

   Forked from brcopeland/pbs-torque

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4. BIOM200 BIOM200 Public

   Forked from kjgaulton/BIOM200

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5. Functional_region_annotation_pipeline Functional_region_annotation_pipeline Public

   A extension of existing variant annotation pipeline which adds extra functional scores and region-based annotations.

   Python

6. WGS_DNM WGS_DNM Public

   pipeline for variant calling, DNM filtering, and annotating WGS data

   Jupyter Notebook