Pinned Loading

1. population_structure_analysis population_structure_analysis Public

   Some scripts to run faststructure, pca and heterozygosity on multiple VCFs, and then plot them.

   R 2

2. snp_calling_bcftools_slurm snp_calling_bcftools_slurm Public

   bcftools snp calling pipeline for SLURM

   Shell 3

3. snp_calling_gatk_sun_grid_engine_SGE snp_calling_gatk_sun_grid_engine_SGE Public

   GATK pipeline for SGE

   Shell 2

4. gradient_forests gradient_forests Public

   Scripts to prepare input for GF using WGS, Pool or Capture Data and then run GF in R

   R

5. RepSweeps RepSweeps Public

   Convergent signals of selective sweeps

   R

6. snp_call_nextflow snp_call_nextflow Public

   Learning nextflow by re-implementing a snp calling pipeline

   Nextflow