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29 Open 145 Closed
29 Open 145 Closed
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Issues list

Wiki overhaul documentation
#189 opened Oct 25, 2024 by josephwb
@josephwb
Removal of hypervariable sequences feature request
#187 opened Oct 24, 2024 by BenKuhnhaeuser
2
pxrms .txt file using wildcard
#183 opened Mar 15, 2024 by luizmchado
6
pxssplit: command not found
#182 opened Feb 22, 2024 by sbrobeson
6
pxcomp outputs an enormous file, or rejects unaligned sequences.
#175 opened Feb 9, 2023 by Gullumluvl
6
phylip gets corrupted when piped bug
#165 opened Aug 14, 2021 by josephwb
@josephwb
3
new program: pxuncat feature request
#164 opened Aug 11, 2021 by josephwb
@josephwb
main_strec.cpp is taking a _looooong_ time to compile enhancement
#163 opened Aug 11, 2021 by josephwb
@josephwb
compilation seems to hang on main_strec.cpp
#162 opened Jul 10, 2021 by josephwb
@josephwb
Allow for adjustment of precision/sig digits
#160 opened Jul 6, 2021 by HeatherKates
1
mean bootstrap support of trees in file
#150 opened Apr 28, 2021 by bioinfowheat
3
enforce multiple-of-3 for aa2cdn &pxtlate, but also add option to "ignore extra junk" enhancement question
#146 opened Apr 22, 2021 by josephwb
@josephwb
4
Need to run tests on i386 enhancement feature request priority
#145 opened Apr 22, 2021 by josephwb
@josephwb
4
How to handle trees with illegal characters? question
#138 opened Oct 19, 2020 by josephwb
pxcomp deal with missing data
#136 opened Aug 27, 2020 by josephwb
@josephwb
4
pxtcol needs a test, example data
#125 opened Dec 19, 2019 by josephwb
@blackrim
pxtcomb (tree grafter) does not work bug
#124 opened Dec 18, 2019 by josephwb
@blackrim
Add leaf stability index feature request
#120 opened Dec 11, 2019 by josephwb
@josephwb
Request to add feature to generate consensus sequences
#105 opened Jun 18, 2019 by Cactusolo
@josephwb
3
Preserve BEAST-style annotations feature request
#91 opened Sep 1, 2018 by josephwb
@josephwb
Using pxclsq to trim codon alignments feature request
#90 opened Jun 8, 2018 by flopezo
5
vcf2fasta - new options?
#72 opened Dec 5, 2017 by sprocha
7
pxltr should preserve annotations if present
#65 opened Jul 17, 2017 by josephwb
8
Program to rotate nodes (feature request) enhancement feature request
#64 opened Jun 22, 2017 by HeatherKates
@josephwb
1
Program that collapses poorly supported edges enhancement feature request
#52 opened Jan 31, 2017 by josephwb
@josephwb
6
ProTip! no:milestone will show everything without a milestone.