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Issues list

FastTree returned a non-zero exit code error Help required for a GTDB-Tk error.
#604 opened Oct 1, 2024 by esraagithub updated Oct 4, 2024
1 task
1
A failure of the classification of a reference genome error Help required for a GTDB-Tk error.
#603 opened Sep 14, 2024 by biotengwk updated Sep 15, 2024
1
GTDB-Tk/2.4.0 - Spirochaetota clustering far from other bacteria from the same phylum
#598 opened Aug 13, 2024 by ValterAlmeida updated Sep 12, 2024
6
Using classify_wf with low completeness genomes
#597 opened Aug 12, 2024 by lingrongjin updated Sep 2, 2024
1
Difference between fastani_ani and closest_placement_ani
#602 opened Aug 28, 2024 by saras224 updated Sep 2, 2024
1
ANI values for the MAGs
#599 opened Aug 21, 2024 by saras224 updated Sep 2, 2024
2
Slow download speed v214
#522 opened Jun 2, 2023 by kafker updated Aug 7, 2024
20
Troubleshooting GTDB-Tk Database Installation and Environment Configuration error Help required for a GTDB-Tk error.
#596 opened Jul 16, 2024 by soojunglee98 updated Jul 29, 2024
3 tasks
3
Bacterial GTDB-Tk classification file does not exist error when using gtdb_to_ncbi_majority_vote.py error Help required for a GTDB-Tk error.
#595 opened Jun 22, 2024 by schmittel updated Jul 2, 2024
1
Total genome counter in log is off (warning message) error Help required for a GTDB-Tk error.
#585 opened Apr 26, 2024 by GabeAl updated May 4, 2024
1
Error running Prodigal on genome error Help required for a GTDB-Tk error.
#566 opened Dec 20, 2023 by fhdbqr updated Apr 22, 2024
2 tasks
4
Use type strains for GTDB to NCBI taxonomy translation
#552 opened Oct 16, 2023 by fplazaonate updated Oct 18, 2023
2
Use Pyrodigal as Prodigal alternative enhancement Proposed feature or change to GTDB-Tk.
#456 opened Dec 5, 2022 by lfenske-93 updated Jan 3, 2023
2
Write debug file on exception enhancement Proposed feature or change to GTDB-Tk.
#432 opened Sep 11, 2022 by aaronmussig updated Sep 11, 2022
Subroutines for classify enhancement Proposed feature or change to GTDB-Tk.
#358 opened Nov 8, 2021 by SilasK updated Dec 20, 2021
1
Unnecessary computation in de novo workflow enhancement Proposed feature or change to GTDB-Tk.
#243 opened Apr 20, 2020 by donovan-h-parks updated May 29, 2020
Establish novelty of user genomes enhancement Proposed feature or change to GTDB-Tk.
#233 opened Mar 13, 2020 by donovan-h-parks updated Mar 13, 2020
Add checkpointing enhancement Proposed feature or change to GTDB-Tk.
#207 opened Dec 12, 2019 by aaronmussig updated Dec 18, 2019
Non-parametric bootstraps enhancement Proposed feature or change to GTDB-Tk.
#116 opened Apr 17, 2019 by donovan-h-parks updated Apr 17, 2019
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